Preliminary Meeting Program

Note: Schedule will be subject to some minor adjustments as registrations and speakers are confirmed.

Day 0 — Monday July 6th: Opening Workshops & Networking Social

Participant Arrival
14:00–15:00 Welcome/Opening Statements
Conference Organizers
Welcome and introduction to the ZAMBI meeting.
15:00–17:30 Parallel Training Workshops
Research Data Management (Robert Beiko | Ben Fisher)
Ensuring your data is FAIR (Findable, Accessible, Interoperable, and Reusable) is essential in today's data-driven research environment. This workshop will introduce you to the tools and techniques of Research Data Management (RDM) to manage data and guarantee reproducibility. You will learn the theory and technical implementation of RDM through a combination of expert-led lectures and hands-on lab exercises. It will cover RDM foundations, version control, machine-actionability and data discovery.
How to Peer Review (Zhenyu Cheng | Shannen Grandy)
Effective peer review is an essential skill for critically engaging with the scientific literature and improving your own writing. Trainees will receive a lecture on how to conduct a review of a manuscript and then have the opportunity to work in small groups to assess a pre-print from BioRxiv. At the end of the session, the critiques from all groups will be compiled and summarized into a peer review document by the leaders of the session and posted to zenodo.
19:00–21:30 Speed Networking Event & Social Dinner
A networking event where trainees rotate in small groups through tables hosted by faculty mentors, allowing for focused conversations and diverse connections in a structured format. This will be followed by an informal social dinner, giving participants the chance to network in a more a relaxed setting/format.

Day 1 — Tuesday July 7th

09:00–10:00 Welcome & Opening Plenary
Andrew Lang

Andrew Lang

Memorial University of Newfoundland - Biology

Andrew Lang received a BSc (Honours) in Biochemistry from Brock University in 1994 followed by a PhD in Microbiology from the University of British Columbia in 2000. After postdoctoral research positions at UBC and the University of Alaska Fairbanks, they joined the Department of Biology at Memorial University of Newfoundland in 2006. Their research lab studies a variety of topics within microbiology. One focus is wildlife microbiology, which includes studying avian influenza viruses and antimicrobial-resistant Escherichia coli in wild birds.

Roles of Wild Birds in the Dissemination of Viral Zoonoses and Antimicrobial-Resistant Bacteria

Abstract

In this presentation I will focus on wild birds and their role in the circulation and dissemination of highly pathogenic avian influenza viruses and antimicrobial-resistant Escherichia coli. Starting in late 2021, there have been repeated introductions of H5 highly pathogenic avian influenza viruses into North America from Eurasia across both the Pacific and Atlantic routes. One introduction was of an H5N5 strain, known as A6, that was first detected in Newfoundland in 2023 and subsequently dispersed throughout Atlantic Canada and into Quebec with a notably high proportion of detected infections in terrestrial mammals. This strain seemed to go largely undetected elsewhere before causing a human fatality in Washington State in November 2025. In addition to viral zoonoses, wildlife are also reservoirs for antimicrobial-resistant bacteria. We have used a culture-based approach to isolate antimicrobial-resistant E. coli from wild birds in Newfoundland, followed by phenotypic and genomic characterization of isolated strains. Overall, wild birds in this region were found to be reservoirs of genetically diverse antimicrobial-resistant and potentially pathogenic E. coli. Strains isolated from birds with greater use of anthropogenically affected environments were more diverse, had higher rates of resistance, and were resistant to more compounds than those from birds that use more pristine environments. The studied bird species make significant local and migratory movements and likely serve as important vectors for the dissemination of these bacteria across broad geographic scales.

10:00–10:30 Coffee & Tea Break
10:30–12:00 Evolution Research Presentations
Speaker 1 (30 min), Speaker 2 (30 min), Speaker 3 (30 min)
Selected research presentations from faculty and experienced trainees on topics related to pathogen evolution, phylogenetics, and computational approaches in One Health.
12:00–13:00 Lunch
13:00–14:00 Methodological Presentations
Speaker 1 (30 min), Speaker 2 (30 min)
Selected and invited presentations focusing on explaining methodology, tools, and available resources.
14:00–14:30 Coffee & Tea Break
14:30–16:00 Parallel Sessions
Session A: 5 Speakers (18 min each) | Session B: 5 Speakers (18 min each)
Selected presentations from trainees across 2 parallel tracks.
16:00–17:00 Evening Plenary
Jennifer Geddes-McAlister

Jennifer Geddes-McAlister

University of Guelph - Molecular & Cellular Biology

Dr. Jennifer Geddes-McAlister is the Canada Research Chair in the Proteomics of Fungal Disease in One Health and an Associate Professor. Her innovative and interdisciplinary research program applies state-of-the-art mass spectrometry-based proteomics and computational biology to tackle fungal diseases across four pillars: i) prevention, ii) diagnostics, iii) monitoring, and iv) treatment, for improved global health. Dr. Geddes-McAlister is recognized as a world leader in proteomics and infectious disease research with over 100 publications, election to the Royal Society of Canada – College of New Scholars, Artists, and Scientists, seven early career researcher awards, an alumni achievement award, and national and international mentorship awards. She is President of the Canadian National Proteomics Network, Vice President of the Human Proteome Organization, co-founder of the Canadian Artificial Intelligence and Mass Spectrometry for Systems Biology (CAN-AIMS) Consortium, Associate Editor for the Journal of Proteome Research, Secretariat for the Humboldt Association of Canada, and founder of ‘Moms in Proteomics’ an international initiative dedicated to recognizing and supporting mothers in STEM.

From Spectra to Solutions: Proteomics at the Forefront of Fungal Infection, Immunity, and Resilience

Abstract

Fungal diseases impact the lives of millions of people across the globe ranging from superficial to systemic infections. Treatment options toward fungal diseases are limited given the emergence of new pathogens with intrinsic resistance and heightened evolution toward resistant strains. To effectively combat fungal disease, my research team harnesses the cutting-edge power of mass spectrometry-based proteomics integrated with advanced bioinformatics. By identifying protein drivers of fungal disease, we can provide new biological insights across four pillars of research: i) Prevention, ii) Diagnostics, iii) Monitoring, and iv) Treatment. For prevention, we disrupt critical proteins and pathways to weaken the pathogen and prevent infection; for diagnostics, we define dual-perspective protein production signatures—spanning both host and pathogen—across spatial and temporal dimensions to enable precise diagnostic and prognostic insights. For monitoring and treatment, we explore host-pathogen interactions at the protein level, uncovering novel druggable targets essential for therapeutic innovation, and we combat antifungal resistance through protein targeting to restore the efficacy of existing antifungal drugs. Together, our integrated proteomics-driven approach offers transformative solutions to fungal disease management with the goal of advancing global health initiatives.

19:00–21:00 Poster Session
Evening poster presentations.

Day 2 — Wednesday July 8th

9:00–10:00 Opening Plenary
Natalie Diether

Natalie Diether

Dalhousie University - Agriculture

Dr. Diether is an Assistant Professor in the Department of Animal Science and Aquaculture at Dalhousie University. Her research program is focused on the function of the gut microbiota and microbial metabolism in the health of production animals. Her work places emphasis on mechanistically-informed dietary strategies and interventions that address challenges in health, productivity, and sustainability, thereby reducing reliance on antimicrobials. Dr. Diether received her PhD in Animal Science from the University of Alberta in 2023, following an MSc and BSc in Agriculture (Animal Science). Her doctoral research used multi-omics techniques to investigate how dietary components shape gut microbial metabolism and host physiological responses in weaned pigs. Following her PhD, she worked as a Research Program Officer for Results Driven Agriculture Research before joining Dalhousie in 2024.

From Lab to Barn: targeting gut microbial metabolites as antibiotic alternatives

Abstract

10:00–10:30 Coffee & Tea Break
10:30–12:00 Microbial Ecology/Microbiome Research Presentations
Speaker 1 (30 min), Speaker 2 (30 min), Speaker 3 (30 min)
Selected research presentations from faculty and experienced trainees on topics related to environmental sequencing, eDNA, community ecology, and microbiome research.
12:00–12:45 Lunch
12:45–13:45 Methodological Presentations
Speaker 1 (30 min), Speaker 2 (30 min)
Selected and invited presentations focusing on explaining methodology, tools, and available resources.
Agricultural Campus and Conference Dinner (Optional)

14:00–15:30: Bus to Dalhousie Agricultural Campus

15:30–19:00: Agricultural Biosecurity Tours & Talks & Refreshments

15:30–19:00: Disease Outbreak Management in Practice: Lessons Learned in HPAI in Poultry

19:00–21:00: Conference Dinner

21:00–22:00: Buses back to Halifax

Dalhousie's Agricultural Campus in Bible Hill incorporates a working research farm. Attendees will get real-world experience of working biosecurity through guided tours and associated expert talks which bridge theory and practice. The trip culminates in our conference dinner showcasing the local agricultural produce, celebrating the connection between sustainable farming and One Health research.

Separate Registration Required - Free Afternoon/Evening if not Attending.

Day 3 — Thursday July 9th

9:00–10:00 Opening Plenary
Maureen Murray

Maureen Murray

Lincoln Park Zoo - Urban Wildlife Institute

Dr. Maureen Murray is the Assistant Director of One Health at Lincoln Park Zoo’s Urban Wildlife Institute in Chicago. She combines social science and wildlife disease ecology to understand the health impacts of human-wildlife interactions to promote public health and biodiversity in cities.

The Chicago Rat Project: A One Health approach to understanding drivers of urban leptospirosis

Abstract

Leptospirosis, a fatal rat-associated disease, is the most widely distributed zoonoses on earth and may be increasing with global changes in urbanization and climate. Although leptospirosis is relatively rare in North America, in 2025 a health alert was issued in Chicago, the “rattiest city in America” from 2015 – 2025. In this talk, I will discuss diverse studies on leptospirosis risk under the Chicago Rat Project, an interdisciplinary effort to understand vulnerable communities and disease mitigation strategies. This approach has revealed environmental and management factors associated with rat infection as well as social factors associated with human risk. Through these projects, I will share lessons learned about the benefits of a One Health approach with multi-sector partnerships to create healthier cities for people and wildlife.

10:00–10:30 Coffee & Tea Break
10:30–12:00 Applied One Health Research Presentations
Speaker 1 (30 min), Speaker 2 (30 min), Speaker 3 (30 min)
Amy Gillgrass

Amy Gillgrass

Dalhousie University

Amy Gillgrass is an Assistant Professor in the Department of Microbiology and Immunology that moved to Dalhousie University in 2025.  Dr. Gillgrass attained her PhD from McMaster University and worked in biotech for several years at Turnstone Biologics before starting her lab at McMaster University (2019). Dr. Gillgrass’ research is focused on utilizing next-generation humanized mouse models to investigate infectious disease and cancer.  Using these mice, Dr. Gillgrass’ lab has established models of HIV, TB and HIV/TB co-infection to explore pathogenesis, therapeutics and vaccination in the context of human immune cells. Based on the innovative nature of her program, Dr. Gillgrass has received the E.J. Moran Campbell Early Career Research Award and the Bhagirath Singh Early Career Award in Infection and Immunity from CIHR.

Investigating immune responses in infectious disease and vaccination using next-generation humanized mouse models

Abstract

Tuberculosis (TB), caused by mycobacterium tuberculosis (Mtb), is the number one infectious disease killer and is the most common cause of death in people living with HIV (PLWH). HIV and TB co-infection place an immense burden on health care systems as they act in synergy to worsen each other’s disease prognosis. Another factor complicating TB care is the increasing prevalence of multi- and extensively-drug resistant TB (MDR/XDR). While HIV and TB are endemic in sub-Saharan Africa, they also disproportionately affect marginalized populations in Canada. Unfortunately, the only licensed TB vaccine, BCG, doesn’t protect from adult pulmonary TB and is not recommended for PLWH. The best way to prevent the emergence of MDR/XDR TB is to develop novel efficacious TB vaccines, which are safe and effective to use in those who are highly at risk. Next-generation humanized mice are ideal models to research this as they recapitulate a more complete human immune response and can be successfully infected with HIV, TB and HIV/TB. We have found that they recapitulate many aspects of human HIV and TB disease pathology. We investigated the immunogenicity and protection efficacy of a next-generation respiratory mucosal trivalent chimpanzee adenoviral-vectored vaccine (Tri:ChAd:TB) in naïve and HIV-infected humanized mice. When immunizing naïve mice, a trend of increased Mtb-specific CD4+ T cells producing IFNy and TNFα in the lungs and spleen was observed. Vaccinated humanized mice challenged with Mtb exhibited significantly reduced lung mycobacterial burden, decreased tissue dissemination and improved lung pathology. HIV-infected mice that were subsequently immunized and challenged with Mtb had a decreased trend in mycobacterial load in the lungs compared to unvaccinated, indicating that the vaccine may offer protection against TB, even in the context of HIV infection. These findings demonstrate the efficacy of the respiratory mucosal Tri:ChAd:TB vaccine and could halt this global epidemic by preventing further emergence of MDR/XDR TB.

Amy Lee

Amy Lee

Simon Fraser University

Dr. Lee joined the Department of Molecular Biology and Biochemistry at Simon Fraser University as an Assistant Professor in 2020. She completed her PhD in Cell and Systems Biology at University of Toronto with Drs. David Guttman and Darrell Desveaux, studying the evolutionary arms race between host and pathogens. This was followed by two postdoctoral fellowships at University of British Columbia (UBC), first with Dr. Nislow, applying comparative bacterial genomics and phenomics to study bacterial adaptation in persistent infections. She then worked with Dr. Bob Hancock applying systems immunology and vaccinology to understand neonatal immune development. She is a Banting Discovery Awardee and MSFHR Scholar. Her current research uses systems biology approaches to improve neonatal sepsis diagnostics and combat antimicrobial resistance.

Tackling Neonatal Sepsis – A Systems Biology and One Health Strategy for a Global Health Crisis

Abstract

Each year, approximately three million newborns die from sepsis worldwide, with ~75% of all deaths under-five years occurring within the first week of life. Sepsis is a global concern, especially to young infants who are at highest risk of mortality. However, there lacks a quick and reliable way to identify the infectious microbes, resulting in babies being over- or under-treated with antibiotics that may contribute to resistance and depletion of limited resources. To tackle this challenge, our group is applying systems biology approaches and advanced omics analyses within a Global Health context to: (1) define host molecular markers in bacterial sepsis using genome-wide transcriptomic analyses and machine learning; (2) identify potential virulence factors in the causal bacterial pathogens using microbial genome-wide association studies; and (3) apply cutting-edge long-read Nanopore 16S sequencing to develop vaccines and improve pathogen identification. Ultimately, our goal is to understand why newborns are highly susceptible to infections during their first week of life, and apply advanced omics strategies to develop real-world applications including vaccines, diagnostics and therapeutics.

12:00–13:00 Lunch
13:00–14:00 Research Presentations
Scott Weese

Scott Weese

University of Guelph - Ontario Veterinary College

Dr. Weese is a veterinary internist and Professor at the Ontario Veterinary College, University of Guelph, Director of the University of Guelph Centre for Public Health and Zoonoses, Chief of Infection Control at the Ontario Veterinary College Health Sciences Centre. He is Chair of the WHO Advisory Group for Critically Important Antimicrobials in Human Medicine, a member of the Government of Canada’s Advisory Group on AMR, the quadripartite’s AMR Multistakeholder Partnership Platform and the Ontario Public Health Emergencies Scientific Advisory Committee, and a past member of the Quadripartite Global Leaders Group on AMR. He also runs the infectious disease website WormsAndGermsBlog.

Antimicrobial use guidelines and lists, and their impact on stewardship and surveillance

Abstract

This presentation will outline major antimicrobial drug ranking, prioritization and categorization systems and lists, with a focus on their goals, gaps and how they can be used to support stewardship and surveillance activities.

14:00–14:30 Coffee & Tea Break
14:30–16:00 Parallel Sessions
Session A: 5 Speakers (18 min each) | Session B: 5 Speakers (18 min each)
Selected presentations from trainees across 2 parallel tracks.
16:00–16:30 Tea Break
16:30–18:30 Outbreak Response Exercise
Organizer: Finlay Maguire
This tutorial/table-top exercise will present an outbreak scenario that starts with a small number of initial cases with no known infectious agent. By combining contextual data and contemporary genomic public health investigation approaches we will identify the pathogen, identify high risk events, and develop a surveillance strategy for monitoring the outbreak.
19:30–21:30 Poster Session and Closing Reception
Final poster presentations and closing reception.